Unipro UGENE user manual

Basics:

• Introduction
• Creating new project
• Working with documents
• Using object views
• Adding and removing plugins
• Access remote database
• Command line interface

• View components
• Sequence overview
• Sequence details
• Annotations editor
• View extensions

• Overview
• Editing the alignment
• Advanced functions

• Basic capabilities

• Overview
• Run HMMER3 search task on remote machines
• Run Smith-Waterman search on remote machines
• Run MUSCLE align on remote machines

Research issues:

• HMMER utilizing Cell Broadband Engine

• Supported formats