SecStructPredictProtein secondary structure prediction OverviewUGENE provides a set of algorithms for protein secondary structure ( alpha-helix, beta-sheet) prediction from raw sequence within common interactive visual interface. You can access these analysis capabilities for protein sequence using menu Analyse -> Predict secondary structure Current available algorithms:
You can also take a look at Upcoming features section for future development plans. If you have any feature requests or intresting suggestions please contact the UGENE team (via email or forum). Usage
After calling Secondary Structure Prediction module, you will see the Prediction Dialog.
 It supports the following options:
Upcoming featuresSeveral other algorithms (improved Chou-Fassman, JPred and others) are planned to be implemented in next releases. Also internal UGENE BLAST plugin support for PsiPred algorithm is planned. |
